PHOTONAI—A Python API for rapid machine learning model development

PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development. It functions as a unifying framework allowing the user to easily access and combine algorithms from different toolboxes into custom algorithm sequences. It is especially designed to support th...

Authors: Leenings, Ramona
Winter, Nils Ralf
Plagwitz, Lucas
Holstein, Vincent
Ernsting, Jan
Sarink, Kelvin
Fisch, Lukas
Steenweg, Jakob
Kleine-Vennekate, Leon
Gebker, Julian
Emden, Daniel
Grotegerd, Dominik
Opel, Nils
Risse, Benjamin
Jiang, Xiaoyi
Dannlowski, Udo
Hahn, Tim
Division/Institute:FB 07: Psychologie und Sportwissenschaft
FB 05: Medizinische Fakultät
Document types:Article
Media types:Text
Publication date:2021
Date of publication on miami:09.01.2023
Modification date:09.01.2023
Edition statement:[Electronic ed.]
Source:PLoS ONE 16 (2021) 7, e0254062, 1-19
Subjects:Machine learning algorithms; Computational pipelines; Optimization; Machine learning; Algorithms; Heart failure; Support vector machines; Supervised machine learning
DDC Subject:610: Medizin und Gesundheit
License:CC BY 4.0
Language:English
Funding:Finanziert durch den Open-Access-Publikationsfonds der Westfälischen Wilhelms-Universität Münster (WWU Münster).
Format:PDF document
URN:urn:nbn:de:hbz:6-11069562461
Other Identifiers:DOI: 10.17879/31099459818
Permalink:https://nbn-resolving.de/urn:nbn:de:hbz:6-11069562461
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  • Digital documents:10.1371_journal.pone.0254062.pdf

    PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development. It functions as a unifying framework allowing the user to easily access and combine algorithms from different toolboxes into custom algorithm sequences. It is especially designed to support the iterative model development process and automates the repetitive training, hyperparameter optimization and evaluation tasks. Importantly, the workflow ensures unbiased performance estimates while still allowing the user to fully customize the machine learning analysis. PHOTONAI extends existing solutions with a novel pipeline implementation supporting more complex data streams, feature combinations, and algorithm selection. Metrics and results can be conveniently visualized using the PHOTONAI Explorer and predictive models are shareable in a standardized format for further external validation or application. A growing add-on ecosystem allows researchers to offer data modality specific algorithms to the community and enhance machine learning in the areas of the life sciences. Its practical utility is demonstrated on an exemplary medical machine learning problem, achieving a state-of-the-art solution in few lines of code. Source code is publicly available on Github, while examples and documentation can be found at www.photon-ai.com.